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Professor & HoD Department of Pharmaceutical Chemistry, JSS College of Pharmacy, (Constituent College, JSS Academy of Higher Education &Research-Deemed to be University, Mysuru) Ooty-643 001, The Nilgiris, Tamilnadu,INDIA The author has about 25 years of teaching and research experience. The Author has more than 125 research publications in reputed National and International journals and has H-index 17 by scopus. He has also published 11 books and 12 patents. He is a recognized research guide for Ph.D in JSS Academy of Health Education and Research and He served as editorial member and reviewer in many reputed National and International journals. He is the winner in Drug Discovery Hackathon-2020 for Covid-19 Drug discovery organized by Govt of India and also received a Research grant of 14.35 lakhs in phase-II research. He is nominated as BOS member in various universities and received about 13 awards. He has organized many national and International seminar/ workshop/ Conferences etc sponsored by various funding agencies.

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Friday, August 24, 2018

INTRA MOLECULAR FORCES


INTRA MOLECULAR FORCES
  • Intra molecular forces are the attraction of atoms within the molecule. It is a strong bond.
·  An intra molecular force is any force that holds together the atoms making up a molecule or compound.
  • Attraction between positive and negative ions in a crystal of an ionic compound.
  • Covalent bonds in molecular substances.
  • Metallic bonds

Types of Bonds
There are four basic ways in which chemical combination occurs:
(1) Ionic or electrovalent bond
(2) Covalent bond
(3) Coordinate bond
(4) Metallic bond
Ionic or Electrovalent Bond.
            Ionic or electrovalent bonds are formed by transfer of valence electrons from one atom to another. This type of bond unites two atoms one of which has excess electrons than the stable number (2 or 8), and the other is short of electrons.
For Ex - Sodium chloride is a typical compound formed in this way.

            Here the sodium atom (2, 8, 1) transfers its excess electron to chlorine atom (2, 8, 7), and thus both attain a stable inert gas type electron configuration. Sodium acquires the electron configuration of neon (2, 8) and becomes positively charged. Chlorine acquires the electron configuration of argon (2, 8, 8) and becomes negatively charged. These oppositely charged ions are held together by electrostatic force of attraction. This type of bond is commonly found in inorganic compounds.

            Ionic or electrovalent compounds are non volatile, soluble in water and possess high melting points. Their aqueous solutions conduct electric current.


            The sodium atom loses the one electron in its outer shell to the chlorine atom, which uses the electron to fill its outer shell. When this occurs, the sodium atom is left with a +1 charge and the chlorine atom a -1 charge. The ionic bond is formed as a result of the attraction of the two oppositely-charged particles.


Covalent Bond.
Ø  Covalent bonds are formed by mutual sharing of electrons. This type of bond unites two atoms, both of which are short of electrons. The two atoms contribute one electron each and then share the resulting pair of electrons.
For Ex -  Hydrogen is the simplest compound formed in this way.
       H. + xH -----------H ~H or H-H
Here the two electrons are shared and give to each hydrogen atom the configuration of helium.
Ø  This type of bond is termed covalent bond and is indicated by a line. Covalent bonds are commonly found in organic compounds.
Ø  A covalent bond between two atoms results from the overlap of an orbital of one atom with an orbital of another atom. When two orbitals overlap they share the same region in space and a new orbital, called a Molecular Orbital (MO), is formed.
Ø  Covalent compounds are volatile, generally insoluble in water, but soluble in organic solvents. They possess low melting and boiling points. Their solutions do not conduct electric current.
Ø  A covalent bond is formed only if: (1) The two combining orbitals are half-filled and      (2) The bonding orbitals approach each other in proper alignment needed for an effective overlap. The electrons in the bonding orbitals have opposite spins.

Types Of Covalent Bonds
There are two main types of covalent bonds or molecular orbitals:
(1) Sigma (α)bonds
(2) Pi(π) bonds
Sigma Bond
A sigma bond is formed by the linear or end-to-end overlap of orbitals. They may be
Obtained
a) By the overlap of two s orbitals,
b) By the overlap of Px and an s orbital,
c) By the overlap of two p orbitals,

 Sigma bonds are symmetrical around the line drawn between the two nuclei. They are represented by a single line drawn between the atomic symbols. The electrons that occupy a sigma bond are called Sigma (α) Electrons.

 Pi-Bond.
A pi (π) bond is formed by parallel or side-to-side overlap of orbitals. For example,

             Like the p orbitals from which it is obtained, a π bond has two lobes. One half of the π bond lies above the plane containing the two nuclei and the other half lies below. The electrons that occupy π bond are known as the Pi (π) Electrons.
            There are two important differences between sigma and pi bonds.
(1) Pi electrons are loosely held than a pair of electrons in a α bond. They are of higher energy. As a result, π bonds are more easily broken and are more reactive than α bonds.
(2) Rotation of atoms is not possible around a π bond. If any attempt is made to do so, the lobes of p orbitals will no longer be coplanar and will not overlap to form the π bond. This restriction in rotation around a π bond is responsible for Cis and Trans isomerism in alkenes.

            Unlike an ionic bond, a covalent bond holds together specific atoms. Covalent bonding can be single covalent, double covalent, or triple covalent depending on the number of pairs of electrons shared. Figure 7 shows the bonding that occurs in the methane molecule, which consists of four single covalent bonds between one carbon atom and four hydrogen atoms.
Carbon-Carbon Single Bond
             Carbon atom has the wonderful property of uniting with other carbon atoms through covalent bonds. This serves to construct the carbon structure of organic molecules.
For example - The molecules of hydrocarbons, ethane and propane contain two and three carbon atoms respectively linked by covalent bonds.

Carbon-Carbon Double Bond
             In some compounds, two of the valencies of a carbon atom may be satisfied by union with the two valencies of another carbon atom.
For example - In ethylene the two carbons are united by two covalent bonds.

Carbon-Carbon Triple Bond
             Sometimes two adjacent carbons are linked together by three covalent bonds.
For example - acetylene

Coordinate Bond.
            Coordinate bond is also formed by mutual sharing of electrons but in this case the two electrons that are shared come from the same atom. A coordinate bond unites two atoms, one of which has a spare pair of electrons and the other is short of a pair of electrons. The first atom (donor atom) contributes one pair (lone pair) of electrons and the second atom (acceptor atom) accepts it.
            After the formation of the bond, the lone pair of electrons is held in common. The coordinate bond is represented by an arrow, pointing away from the donor atom.
For example - the coordinate bond is found in the boron hydride-ammonia complex.
            When both shared electrons in a covalent bond come from the same atom, the bond is called a coordinate covalent bond. Coordinate covalent bond is a single bond similar in properties to a covalent bond.
 For example- negatively-charged chlorate ion.
            The ion consists of one chlorine atom and three oxygen atoms with a net charge of -1, and is formed with two coordinate covalent bonds and one covalent bond. The chlorine atom has effectively gained an electron through the covalent bond, which causes the overall negative charge.
Metallic Bond
                 Metallic bonds are bonds where the atoms achieve a more stable configuration by sharing the electrons in their outer shell with many other atoms.
            Elements of similar but relatively low electro negativities (i.e., metals) form metallic bonds. It is these bonds that are operative in a typical metal and that are responsible for metallic properties: reflectivity, conductivity, malleability, and strength. Metallic bonds form between atoms that have fewer valence electrons than they have valence orbitals.
            It would contribute its valence electron to a bond with one or the other of the pair. The sodium atoms are therefore driven to aggregate, using their relatively few valence electrons to bond together as many nuclei as possible via the Coulomb attraction. The aggregation is very regular in nature, resulting in an ordered arrangement of metal atoms called a lattice. As a result of aggregation, each sodium atom uses all of its valence orbitals in forming partial bonds with a number of neighbours.
            The nuclei are represented as points, and the electrons as waves. That the electrons are delocalized waves is consistent with the conductivity of metals, and with their flexibility and strength. Putting stress on metals moves the nuclei, but the waves adjust, maintaining bonding. Because the electrons are waves, they are everywhere in the crystal at once. Thus the electrons absorb and reemit photons of all energies in the visible region of the spectrum, giving metals their highly reflective appearance.
Polar and non polar Bonds
            When a covalent bond is formed between two atoms with different electro negativities, the electrons involved in the bond are not shared. The atom with higher electro negativity pulls the bonding electrons closer to it.
            In other words, the electron density in the molecular orbital would be greater around the atom with higher electro negativity. The result of this displacement of the molecular orbital toward the more electronegative atom will be that the more electronegative atom will acquire a small negative and the less electronegative atom will acquire a small positive charge. This is called polar bond.
                        Let us now consider the C-CI covalent bond. Because chlorine is more electronegative than carbon, the electro n density in the molecular orbital would be higher around chlorine atom than around the carbon atom. Thus the chlorine atom acquires a small negative charge and the carbon atom acquires a small positive charge. This may be indicated in the following way.
            When a covalent bond is formed between two atoms with same e1ectronegativities (C-C, H-H, and F-F), the electrons involved in the bond are shared equally. Electron density in the molecular orbital binding the two atoms together is same around each atom. There is no positive and negative end. Such a bond is said to be a Non polar Bond.
Polar and Non polar Molecules
            When the shared pair of electrons which are forming the bond in a molecule are not shared equally, the resulting molecule will have a positive end and a negative end. This type of bond is a polar covalent bond. The molecules are called dipolar or polar molecules.
            A molecule is said to be a polar molecule if it satisfies the following two conditions:
(1) The molecule must contain one or more polar bonds.
(2) The polar bonds must be so directed that there are separate centres of positive and negative charges in the molecule.
For example
a)      Carbon dioxide (CO2) has two polar carbon-oxygen bonds, but the molecule is not polar. The carbon dioxide molecule is linear and the centre of the two negative charges is at the same place as the centre of the positive charge - the carbon atom (Fig. 5.35).
 
b)      Water molecule has two polar oxygen-hydrogen bonds. The H-O--H bond angle is 104°. The centre of the positive charge is between the hydrogen atoms (Fig. 5.36). As the centre of positive charge and the centre of negative charge do not coincide, water molecule is polar.
c)      Carbon tetrachloride has four polar carbon-chlorine bonds, but the molecule is not polar. The Carbon tetra chloride is tetrahedral (all Cl-C-Cl angles are 109°28'), and the centre of four negative charges is at the same place as the centre of the positive charge of the carbon atom (Fig. 5.37).
Examples

Dipole moment 
            Polar molecules behave like small magnets and possess a dipole moment. The dipole moment (µ) is the product of the magnitude of the charges and the distance between the charges.
            The measure of molecular polarity is a quantity called the dipole moment (µ). Dipole moment is defined as magnitude of charge (Q) times distance (r) between the charges.
µ = (Q)(r)       Q charge in coulombs (C)      r distance in meters (m)
            The product of the strength of either of the charges in anelectric dipole and the distance separating the two charges. Itis expressed in coulomb meters. Dipole moment is a vectorquantity;  its direction is defined as toward the positive charge.
            Many molecules have such dipole moments due to non-uniform distributions of positive and negative charges on the various atoms. Such is the case with polar compounds like hydrogen fluoride (HF), where electron density is shared unequally between atoms.
            A molecule with a permanent dipole moment is called a polar molecule. A molecule is polarized when it carries an induced dipole. The physical chemist Peter J. W. Debye was the first scientist to study molecular dipoles extensively, and, as a consequence, dipole moments are measured in units named debye in his honor.
With respect to molecules, there are three types of dipoles:
Permanent dipoles: These occur when two atoms in a molecule have substantially different electro negativity: One atom attracts electrons more than another, becoming more negative, while the other atom becomes more positive.
Instantaneous dipoles: These occur due to chance when electrons happen to be more concentrated in one place than another in a molecule, creating a temporary dipole.
Induced dipoles: These can occur when one molecule with a permanent dipole repels another molecule's electrons, "inducing" a dipole moment in that molecule.
            The simplest example of a dipole is a water molecule. A molecule of water is polar because of the unequal sharing of its electrons in a “bent” structure. Since oxygen has a higher electro negativity than hydrogen, the side of the molecule with the oxygen atom has a partial negative charge while the hydrogen, in the center, has a partial positive charge. Because of this, the direction of the dipole moment points towards the oxygen.
It is expressed in the units of Debye and written as D (where 1 Debye = 1 x 10-18e.s.u cm). nA dipole moment is a vector quantity and is therefore represented by a small arrow with a tail at the positive center and head pointing towards a negative center. In the case of a Water molecule, the Dipole moment is 1.85 D, whereas a molecule of hydrochloric acid is 1.03 D and can be represented as:            
 

Thursday, August 16, 2018

STRUCTURES AND PROPERTIES


STRUCTURE AND PROPERTIES
The Structure of an Atom

Ø  All matter is composed of atoms, existing individually or in combination with each other.
Ø  An atom is an extremely small electrically-neutral particle. It is the smallest unit involved in the chemical change of matter.
Ø  The views on the atomic structure which are accepted today have developed from the classical Rutherford-Bohr theory.
Ø  According to this theory, the atom is made of a central positively charged. Nucleus containing positively charged particles called Protons and neutral particles called Neutrons, both having unit mass. The nucleus is surrounded by negatively charged particles called Electrons which carry one unit negative charge and negligible weight.
Ø  The electrons are said to revolve around the nucleus in fixed orbits or energy levels. While the electron moves in such a level, it possesses a definite quantity of energy and it neither emits nor absorbs energy. The electrons are arranged in the orbits so that the maximum number of electrons in the various orbits starting from the one nearest the nucleus is 2, 8, 18, 32, 18,8.
Ø   The outermost orbit of electrons in different atoms (except those of inert gases), is incomplete and the electrons in it are known as the Valence Electrons.
Ø  Together the neutrons and protons give the nucleus its mass, but the protons alone give the nucleus its positive charge.
Atomic Number
            The number of protons or electrons present in an atom is called atomic number. The symbol Z is often used for atomic number (or number of protons).
No. of protons in an atom = No. of electrons
For example - Hydrogen has an atomic number of 1 and carbon has an atomic number of 6.

Atomic Mass Number or Atomic Weight

Ø  The sum of the total number of protons, Z, and the total number of neutrons, N, is called the atomic mass number. The symbol is A.
Ø  Not all atoms of the same element have the same atomic mass number, because, although the Z is the same, the N and thus the A are different.
Ø  The masses of atomic particles are given in atomic mass units (amu).
Ø  A proton has a mass of 1.0 amu and a positive charge (+1). The neutron also has a mass of 1.0 amu but is neutral in charge. The electron has a mass of 0.00055 or 1/1835 amu and a negative charge (-1).
Ø  Atoms of the same element with different atomic mass numbers are called isotopes.
Ø  Isotopes are atoms of the same element having different masses, due to varying numbers of neutrons.
Molecules
            Molecules are groups or clusters of atoms held together by means of chemical bonding. There are two types of molecule.
1.Molecules of an Element
            In certain cases, two single atoms of an element can be attracted to one another by a bond to form a molecule.
Examples -- hydrogen, oxygen, and bromine. The molecular formulas for these are H, O, and Br. Most gaseous elements exist as 2 2 2 molecules of two atoms.
2.Molecules of a Compound
            Two atoms of different elements held together by a bond form a compound. The molecule is the primary particle of a chemical compound.
Examples --hydrogen chloride (HCl), water (H2O), methane (CH4) and  ammonia (NH3).

Molecular Weight
            The weight of a molecule, the molecular weight, is the total mass of the individual atoms. Therefore, it is fairly simple to calculate the mass of any molecule if its formula is known.
For Example – Molecular weight of water (H2O) = At.wt. of H2 + At.wt. of O = 2+16 = 18.
ATOMIC ORBITALS

The electron shells are around the nucleus, and the shells are referred to by number. The first, or No. 1, shell is the one nearest the nucleus; the second, or No. 2, shell is next; then the third, or No. 3, shell; and so on in numerical order. The principal cells are also called as the capital letters K, L, M, N, O respectively.
             In general, electrons closer to the nucleus have a lower energy state. Atomic electrons always seek the lowest energy state available. The electron shells represent major energy states of electrons. Each shell contains one or more sub shells called orbitals, each with a slightly different energy. In order of increasing energy, the orbitals are designated by the small letters s, p, d, f, g, h.
            No two shells consist of the same number of orbitals. In general, each higher shell contains a new type of orbital:
The first shell contains an s orbital,
The second shell contains s and p orbitals,
The third shell contains s, p, and d orbitals,
The fourth shell contains s, p, d, and f orbitals, and so on.

Shape of s Orbitals.
            An s orbital has the shape of a sphere (Fig. 5.8.). In this orbital there is an equal probability of finding the electron in any direction away from the nucleus. The difference between an electron in 1s and in 2s orbital is that; the electron in the 2s orbital is further away from the nucleus and has greater energy. In the s sub shell for which there is only one orbital.

Shape of p Orbitals
             A p orbital is dumb-bell shaped (Fig. 5.9). There are two lobes associated with this orbital. They are located on opposite sides of the nucleus and directed along a particular axis. In the p sub shell there are three orbitals of equal energy for electrons to occupy. These three p orbitals are directed along the three coordinate axes
ELECTRON CONFIGURATION
            The distribution of electrons in shells, sub shells and orbitals is governed by the following rules:
The total number of electrons that can be accommodated in a Shell is equal to 2n2, where n refers to the principal quantum number of the shell. Thus the first shell can accommodate 2 electrons, the second 8, the third 18, and the fourth 32.
The total number of electrons that can be accommodated in a Sub shell is equal to twice the number of orbitals it contains. Thus an s sub shell can have 2 electrons because it has only one orbital, p sub shell can have 6 electrons due to three orbitals, d can have 10 electrons due to five orbitals, and f can have 14 electrons due to seven orbitals. 
1.      Pauli's Exclusion Principle - The total number of electrons that can be accommodated in an orbital is 2 and these two electrons must have opposite spins. Electrons with opposite spins are given the symbols ­ and ¯.
2.      Electrons occupy the orbital of the lowest energy first and then the filling of the orbitals of higher energy starts. Thus the electrons fill the 1s orbital before occupying 2s orbital. The energy of orbitals of the various sub shells follows the sequence given below:
                        1s < 2s < 2p < 3s < 3p < 4s < 3d < 4p < 5s

 In a sub shell, all the available degenerate orbitals (i.e., the orbitals of same energy) are occupied singly first and then pairing of electrons in each orbital occurs. Thus, of the three degenerate orbitals of p sub shell (Px, Py and pz), no one will have two electrons as long as any other is vacant: This is called Hund's Rule, or the Principle of Maximum Multiplicity.
            The distribution of electrons in an atom is always written in terms of electrons which each of the sub shells occupies. In common practice, the number of electrons in the sub shell are indicated as superscripts (Fig. 5.7).
            The complete electron configuration of any element is written by listing the sub shells in the order of increasing energy and the number of electrons occupying each sub shells are indicated by superscripts.
n   Ne à 1s2 2s2 2p6                          (10 electrons)
n  F à 1s2 2s2 2p5                              (9 electrons)
n  Mg à 1s2 2s2 2p6 3s2                  (12 electrons)
n  Mg2+ à 1s2 2s2 2p6                      (10 electrons)

            The outermost shell is known as the Valence Shell and the electrons that occupy this shell are called the Valence Electrons.

Rearrangement Reactions